Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01835.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1921
ACGTcount: A:0.28, C:0.23, G:0.19, T:0.30


Found at i:1286 original size:36 final size:36

Alignment explanation


    Indices: 1246--1324  Score: 158
    Period size: 36  Copynumber: 2.2  Consensus size: 36

       1236 TATGTTTTGT

                                                
       1246 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
          1 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA

                                                
       1282 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
          1 ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA

                   
       1318 ATGAAGC
          1 ATGAAGC

       1325 GCAGTTTCAT


Statistics
Matches: 43,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  36   43  1.00

ACGTcount: A:0.39, C:0.19, G:0.18, T:0.24


Consensus pattern (36 bp):   
ATGAAGCTAATCGCAACAACAACTTTGTTTACGAGA
Done.