Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01838.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 585

Length: 976
ACGTcount: A:0.29, C:0.17, G:0.23, T:0.32


Found at i:260 original size:18 final size:18

Alignment explanation


    Indices: 209--292  Score: 116
    Period size: 18  Copynumber: 4.7  Consensus size: 18

        199 GAAACATGGA

                     **      *
        209 AGGAGAAATAATGGGAGA
          1 AGGAGAAATCCTGGGAGG

                              
        227 AGGAGAAATCCTGGGAGG
          1 AGGAGAAATCCTGGGAGG

                               
        245 AGGAGAAATGCC-GGGAGG
          1 AGGAGAAAT-CCTGGGAGG

                   *          
        263 AGGAGAAGTCCTGGGAGG
          1 AGGAGAAATCCTGGGAGG

                        
        281 AGGAGAAATCCT
          1 AGGAGAAATCCT

        293 AGAACGAACA


Statistics
Matches: 59,  Mismatches: 5, Indels: 4
        0.87            0.07        0.06

Matches are distributed among these distances:
  17    2  0.03
  18   55  0.93
  19    2  0.03

ACGTcount: A:0.37, C:0.10, G:0.43, T:0.11


Consensus pattern (18 bp):   
AGGAGAAATCCTGGGAGG
Done.