Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01843.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3088
ACGTcount: A:0.29, C:0.21, G:0.21, T:0.30


Found at i:3050 original size:42 final size:41

Alignment explanation


    Indices: 2991--3070  Score: 151
    Period size: 42  Copynumber: 1.9  Consensus size: 41

       2981 CTTAAATGAA

                                                      
       2991 TAATTGATTCTCACACTGTAGCTATTTTTTTTTCCTTTGCTT
          1 TAATTGATTCTCACACTGTAGCTATTTTTTTTT-CTTTGCTT

                                                  
       3033 TAATTGATTCTCACACTGTAGCTATTTTTTTTTCTTTG
          1 TAATTGATTCTCACACTGTAGCTATTTTTTTTTCTTTG

       3071 GTTCTTTGTC


Statistics
Matches: 38,  Mismatches: 0, Indels: 1
        0.97            0.00        0.03

Matches are distributed among these distances:
  41    5  0.13
  42   33  0.87

ACGTcount: A:0.17, C:0.17, G:0.10, T:0.55


Consensus pattern (41 bp):   
TAATTGATTCTCACACTGTAGCTATTTTTTTTTCTTTGCTT
Done.