Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01882.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 805

Length: 1343
ACGTcount: A:0.27, C:0.18, G:0.19, T:0.35


Found at i:212 original size:95 final size:94

Alignment explanation


    Indices: 41--233  Score: 269
    Period size: 95  Copynumber: 2.0  Consensus size: 94

         31 ACTATTTGGC

                               *          ** * *         * *    *            
         41 AGTTAAGTTTGGCTTCAATTTTCAAATTGGTGCTTGAATTTTTTTTTTCCAATTTGGTACATGAG
          1 AGTTAAGTTTGGCTTCAATCTTCAAATTGGCACCTAAATTTTTTTGTCCCAACTTGGTACATGAG

                                        *
        106 TTTGGCCACAATGTTCATTTTGGTACCTG
         66 TTTGGCCACAATGTTCATTTTGGTACCTA

                *                    *                                       
        135 AGTTGAGTTTGGCTTCAATCTTCAATTTGGCACCTAAATTCTTTTTGTCCCAACTTGGTACATGA
          1 AGTTAAGTTTGGCTTCAATCTTCAAATTGGCACCTAAATT-TTTTTGTCCCAACTTGGTACATGA

                   *                      
        200 GTTTGGCTACAATGTTCATTTTGGTACCTA
         65 GTTTGGCCACAATGTTCATTTTGGTACCTA

                
        230 AGTT
          1 AGTT

        234 TTTTTGTTTT


Statistics
Matches: 86,  Mismatches: 12, Indels: 1
        0.87            0.12        0.01

Matches are distributed among these distances:
  94   33  0.38
  95   53  0.62

ACGTcount: A:0.22, C:0.16, G:0.19, T:0.44


Consensus pattern (94 bp):   
AGTTAAGTTTGGCTTCAATCTTCAAATTGGCACCTAAATTTTTTTGTCCCAACTTGGTACATGAG
TTTGGCCACAATGTTCATTTTGGTACCTA
Done.