Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01888.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4849
ACGTcount: A:0.32, C:0.15, G:0.19, T:0.34


Found at i:1944 original size:245 final size:245

Alignment explanation


    Indices: 1500--2236  Score: 1332
    Period size: 245  Copynumber: 3.0  Consensus size: 245

       1490 CTAAATATAC

                    *              *                                         
       1500 TTGAAATTTCTCCA-TTCAAATTTGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
          1 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG

                                                                             
       1564 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
         66 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA

                                                                             
       1629 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
        131 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG

                                                              
       1694 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
        196 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG

                                                       *                     
       1744 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGAGATCTATTCGGTTATTAAATG
          1 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG

                      *                   *                        *         
       1809 ATACATAGTGTGATACAGTCAAAACAAGGTGTTATAGTAAGAAAAGAATAGATACGTCAGAGACA
         66 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA

                                                                             
       1874 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
        131 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG

                                                              
       1939 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
        196 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG

              *                                  *         *                 
       1989 TTCAAATTCCTCCATTTCAAATTCGATTTGAACCAAATATAGGGGATTTATTCGGTTATTAAATG
          1 TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG

                                                            *         *     *
       2054 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAAAAGATACCTCGGAGACG
         66 ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA

                          *                 *                                
       2119 GGCGGATTCATCAACGGATTCTCTATCCCATCATTTGCCATCTAATTGATTTATGTTCGTTATAG
        131 GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG

                                                            * 
       2184 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATTG
        196 GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG

               
       2234 TTG
          1 TTG

       2237 TCTGCCTTGT


Statistics
Matches: 472,  Mismatches: 20, Indels: 1
        0.96            0.04        0.00

Matches are distributed among these distances:
 244   13  0.03
 245  459  0.97

ACGTcount: A:0.34, C:0.14, G:0.19, T:0.33


Consensus pattern (245 bp):   
TTGAAATTCCTCCATTTCAAATTCGATTTGAACCAAAGATAGGGGATCTATTCGGTTATTAAATG
ATACATAGTGCGATACAGTCAAAACAAGGTATTATAGTAAGAAAAGAATAGATACCTCAGAGACA
GGCGGATTCATCAATGGATTCTCTATCCCATCTTTTGCCATCTAATTGATTTATGTTCGTTATAG
GATAAGAAGATGGTTAGATTGCCACTATTATTTTTAAGGGTGATAAATGG
Done.