Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01894.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5169
ACGTcount: A:0.31, C:0.19, G:0.20, T:0.30


Found at i:394 original size:22 final size:22

Alignment explanation


    Indices: 369--413  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        359 TTTAATAAAA

                                  
        369 AAAATATCTACAAAATATTCCT
          1 AAAATATCTACAAAATATTCCT

                   *    *         
        391 AAAATATTTACAGAATATTCCT
          1 AAAATATCTACAAAATATTCCT

             
        413 A
          1 A

        414 CACTCCCCCT


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33


Consensus pattern (22 bp):   
AAAATATCTACAAAATATTCCT

Found at i:4994 original size:22 final size:22

Alignment explanation


    Indices: 4969--5013  Score: 72
    Period size: 22  Copynumber: 2.0  Consensus size: 22

       4959 TTTAATAAAA

                                  
       4969 AAAATATCTACAAAATATTCCT
          1 AAAATATCTACAAAATATTCCT

                   *    *         
       4991 AAAATATTTACAGAATATTCCT
          1 AAAATATCTACAAAATATTCCT

             
       5013 A
          1 A

       5014 CAGTGATTCA


Statistics
Matches: 21,  Mismatches: 2, Indels: 0
        0.91            0.09        0.00

Matches are distributed among these distances:
  22   21  1.00

ACGTcount: A:0.49, C:0.16, G:0.02, T:0.33


Consensus pattern (22 bp):   
AAAATATCTACAAAATATTCCT
Done.