Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01909.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3844
ACGTcount: A:0.27, C:0.16, G:0.22, T:0.34


Found at i:868 original size:14 final size:14

Alignment explanation


    Indices: 845--875  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

        835 TGGCTCTTGA

                          
        845 TTTTTATGTTTTTT
          1 TTTTTATGTTTTTT

                 *        
        859 TTTTTTTGTTTTTT
          1 TTTTTATGTTTTTT

               
        873 TTT
          1 TTT

        876 GTGTGTGTGT


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.03, C:0.00, G:0.06, T:0.90


Consensus pattern (14 bp):   
TTTTTATGTTTTTT

Found at i:3606 original size:33 final size:33

Alignment explanation


    Indices: 3564--3631  Score: 91
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       3554 AGGCTATGGA

                                             
       3564 CGGAAACAAAGACATTGCAACGGATCAAGTATC
          1 CGGAAACAAAGACATTGCAACGGATCAAGTATC

                        *   * * *         *  
       3597 CGGAAACAAAGATATTTCTATGGATCAAGTCTC
          1 CGGAAACAAAGACATTGCAACGGATCAAGTATC

              
       3630 CG
          1 CG

       3632 AAAAAGAAAT


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21


Consensus pattern (33 bp):   
CGGAAACAAAGACATTGCAACGGATCAAGTATC
Done.