Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01909.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1881
ACGTcount: A:0.27, C:0.20, G:0.23, T:0.31


Found at i:1643 original size:33 final size:33

Alignment explanation


    Indices: 1601--1668  Score: 91
    Period size: 33  Copynumber: 2.1  Consensus size: 33

       1591 AGGCTATGGA

                                             
       1601 CGGAAACAAAGACATTGCAACGGATCAAGTATC
          1 CGGAAACAAAGACATTGCAACGGATCAAGTATC

                        *   * * *         *  
       1634 CGGAAACAAAGATATTTCTATGGATCAAGTCTC
          1 CGGAAACAAAGACATTGCAACGGATCAAGTATC

              
       1667 CG
          1 CG

       1669 AAAAAGAAAT


Statistics
Matches: 30,  Mismatches: 5, Indels: 0
        0.86            0.14        0.00

Matches are distributed among these distances:
  33   30  1.00

ACGTcount: A:0.38, C:0.21, G:0.21, T:0.21


Consensus pattern (33 bp):   
CGGAAACAAAGACATTGCAACGGATCAAGTATC
Done.