Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01928.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1945
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:317 original size:6 final size:6

Alignment explanation


    Indices: 307--340  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        297 CCTGAAGCTT

                 *        *                        
        307 CTTCCT CTTCCC TTTCCC CTTCCC CTTCCC CTTC
          1 CTTCCC CTTCCC CTTCCC CTTCCC CTTCCC CTTC

        341 TCATTCTCTT


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
   6   25  1.00

ACGTcount: A:0.00, C:0.59, G:0.00, T:0.41


Consensus pattern (6 bp):   
CTTCCC

Found at i:1650 original size:7 final size:7

Alignment explanation


    Indices: 1638--1663  Score: 52
    Period size: 7  Copynumber: 3.7  Consensus size: 7

       1628 AGGATCATAC

                   
       1638 ATATGGG
          1 ATATGGG

                   
       1645 ATATGGG
          1 ATATGGG

                   
       1652 ATATGGG
          1 ATATGGG

                 
       1659 ATATG
          1 ATATG

       1664 TCTAAGGCAC


Statistics
Matches: 19,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
   7   19  1.00

ACGTcount: A:0.31, C:0.00, G:0.38, T:0.31


Consensus pattern (7 bp):   
ATATGGG
Done.