Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01936.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2960
ACGTcount: A:0.31, C:0.21, G:0.18, T:0.30


Found at i:474 original size:28 final size:26

Alignment explanation


    Indices: 443--517  Score: 80
    Period size: 26  Copynumber: 2.8  Consensus size: 26

        433 AAAAGCAGCT

                                        
        443 AAATTACTATAATACCCCTATGTATGAA
          1 AAATTACTATAATACCCCTA-GT-TGAA

                    * *             * 
        471 AAATTACTGTTATACCCCTAGTTGCA
          1 AAATTACTATAATACCCCTAGTTGAA

                    *             
        497 AAATTACCGA-AATACCCCTAG
          1 AAATTA-CTATAATACCCCTAG

        518 GGTTAAATTG


Statistics
Matches: 40,  Mismatches: 6, Indels: 4
        0.80            0.12        0.08

Matches are distributed among these distances:
  26   19  0.47
  27    3  0.08
  28   18  0.45

ACGTcount: A:0.39, C:0.23, G:0.09, T:0.29


Consensus pattern (26 bp):   
AAATTACTATAATACCCCTAGTTGAA

Found at i:944 original size:15 final size:15

Alignment explanation


    Indices: 924--962  Score: 78
    Period size: 15  Copynumber: 2.6  Consensus size: 15

        914 CTGTTACCTG

                           
        924 AATGGGCTTAGGCCC
          1 AATGGGCTTAGGCCC

                           
        939 AATGGGCTTAGGCCC
          1 AATGGGCTTAGGCCC

                     
        954 AATGGGCTT
          1 AATGGGCTT

        963 GAGCTGACTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.21, C:0.23, G:0.33, T:0.23


Consensus pattern (15 bp):   
AATGGGCTTAGGCCC
Done.