Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01950.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5400
ACGTcount: A:0.31, C:0.20, G:0.22, T:0.28


Found at i:4616 original size:111 final size:111

Alignment explanation


    Indices: 4395--4621  Score: 292
    Period size: 111  Copynumber: 2.0  Consensus size: 111

       4385 TGAAGGAACT

                 *  *                  *             *                       
       4395 CATGATAGCGAAAATCAATCAGAAGAATCTGCTCCTGAACTTGATAACGTTTCTTCCGAGCCTGC
          1 CATGACAGTGAAAATCAATCAGAAGAAGCTGCTCCTGAACTCGATAACGTTTCTTCCGAGCCTGC

              *         **   *                            
       4460 AACCAAGGAGGATGGAAGCAATATCTCTGTTGCTAATAACATTGCA
         66 AAACAAGGAGGACAGAAACAATATCTCTGTTGCTAATAACATTGCA

            *               *                              *        *        
       4506 GATGACAGTGAAAATCGATCAGAAGAAGCTGCTCCTGAACTCGATAAGGTTTCTTCTGAGCCTGC
          1 CATGACAGTGAAAATCAATCAGAAGAAGCTGCTCCTGAACTCGATAACGTTTCTTCCGAGCCTGC

                 *              *           * *    **     
       4571 AAACATGGAGGACAGAAACAGTATCTCTGTTGTTCATAATGTTGCA
         66 AAACAAGGAGGACAGAAACAATATCTCTGTTGCTAATAACATTGCA

                 
       4617 CATGA
          1 CATGA

       4622 TGACAATCGT


Statistics
Matches: 97,  Mismatches: 19, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
 111   97  1.00

ACGTcount: A:0.33, C:0.20, G:0.22, T:0.26


Consensus pattern (111 bp):   
CATGACAGTGAAAATCAATCAGAAGAAGCTGCTCCTGAACTCGATAACGTTTCTTCCGAGCCTGC
AAACAAGGAGGACAGAAACAATATCTCTGTTGCTAATAACATTGCA
Done.