Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01955.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4450
ACGTcount: A:0.32, C:0.16, G:0.22, T:0.30


Found at i:1374 original size:71 final size:71

Alignment explanation


    Indices: 1252--1393  Score: 241
    Period size: 71  Copynumber: 2.0  Consensus size: 71

       1242 TCTTTCACCA

                                                                             
       1252 GATTTCTGCAACTGCATCTGCTCCAACTAAACAAACAGTCGAGACCAGTGCTAATTTGATGGATC
          1 GATTTCTGCAACTGCATCTGCTCCAACTAAACAAACAGTCGAGACCAGTGCTAATTTGATGGATC

                  
       1317 TAACCG
         66 TAACCG

                     *                                     *           *     
       1323 GATTT-TGCTACTGCATCTGCTCCAACTAAACAAAACAGTCGAGACCGGTGCTAATTTGGTGGAT
          1 GATTTCTGCAACTGCATCTGCTCCAACTAAAC-AAACAGTCGAGACCAGTGCTAATTTGATGGAT

                   
       1387 CTAACCG
         65 CTAACCG

       1394 CTTTCATTTA


Statistics
Matches: 67,  Mismatches: 3, Indels: 2
        0.93            0.04        0.03

Matches are distributed among these distances:
  70   25  0.37
  71   42  0.63

ACGTcount: A:0.30, C:0.25, G:0.20, T:0.26


Consensus pattern (71 bp):   
GATTTCTGCAACTGCATCTGCTCCAACTAAACAAACAGTCGAGACCAGTGCTAATTTGATGGATC
TAACCG
Done.