Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01967.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 647

Length: 1079
ACGTcount: A:0.32, C:0.18, G:0.21, T:0.29


Found at i:1001 original size:22 final size:22

Alignment explanation


    Indices: 949--992  Score: 88
    Period size: 22  Copynumber: 2.0  Consensus size: 22

        939 ATACAATGTA

                                  
        949 ATATTTTAATTATTCAGTATAG
          1 ATATTTTAATTATTCAGTATAG

                                  
        971 ATATTTTAATTATTCAGTATAG
          1 ATATTTTAATTATTCAGTATAG

        993 TTTTCTTAAA


Statistics
Matches: 22,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   22  1.00

ACGTcount: A:0.36, C:0.05, G:0.09, T:0.50


Consensus pattern (22 bp):   
ATATTTTAATTATTCAGTATAG
Done.