Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g01996.N3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2971
ACGTcount: A:0.27, C:0.20, G:0.21, T:0.32


Found at i:2160 original size:90 final size:90

Alignment explanation


    Indices: 2053--2234  Score: 346
    Period size: 90  Copynumber: 2.0  Consensus size: 90

       2043 TCTGACCATT

                    *                                                        
       2053 TCATTTAGGTTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
          1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC

                                     
       2118 TTTTAGATTGTTGAAATTGATCTGA
         66 TTTTAGATTGTTGAAATTGATCTGA

                                                                             
       2143 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
          1 TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC

                          *          
       2208 TTTTAGATTGTTGATATTGATCTGA
         66 TTTTAGATTGTTGAAATTGATCTGA

              
       2233 TC
          1 TC

       2235 TAGGGCCTTA


Statistics
Matches: 90,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  90   90  1.00

ACGTcount: A:0.21, C:0.14, G:0.18, T:0.47


Consensus pattern (90 bp):   
TCATTTAGATTCTTTCTTTTGGTCTTTGCTGGAAGCTAATAAATGAATTCTGGCTTTCTCTGATC
TTTTAGATTGTTGAAATTGATCTGA
Done.