Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02014.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3887
ACGTcount: A:0.31, C:0.17, G:0.23, T:0.29


Found at i:907 original size:24 final size:24

Alignment explanation


    Indices: 878--925  Score: 87
    Period size: 24  Copynumber: 2.0  Consensus size: 24

        868 GCGTGTCTTC

                           *        
        878 CAAGGAAGAGAAAGATAAATCATT
          1 CAAGGAAGAGAAAGAGAAATCATT

                                    
        902 CAAGGAAGAGAAAGAGAAATCATT
          1 CAAGGAAGAGAAAGAGAAATCATT

        926 ATCACAAAAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  24   23  1.00

ACGTcount: A:0.54, C:0.08, G:0.23, T:0.15


Consensus pattern (24 bp):   
CAAGGAAGAGAAAGAGAAATCATT
Done.