Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02015.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2212
ACGTcount: A:0.27, C:0.18, G:0.21, T:0.34


Found at i:80 original size:29 final size:29

Alignment explanation


    Indices: 47--104  Score: 116
    Period size: 29  Copynumber: 2.0  Consensus size: 29

         37 GCTGATGAAA

                                         
         47 CTATAGCATTAGCTAAAAGTAGTGTTCTT
          1 CTATAGCATTAGCTAAAAGTAGTGTTCTT

                                         
         76 CTATAGCATTAGCTAAAAGTAGTGTTCTT
          1 CTATAGCATTAGCTAAAAGTAGTGTTCTT

        105 AGTTGCGTAA


Statistics
Matches: 29,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   29  1.00

ACGTcount: A:0.31, C:0.14, G:0.17, T:0.38


Consensus pattern (29 bp):   
CTATAGCATTAGCTAAAAGTAGTGTTCTT
Done.