Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02017.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2998
ACGTcount: A:0.27, C:0.19, G:0.21, T:0.33


Found at i:152 original size:2 final size:2

Alignment explanation


    Indices: 145--185  Score: 75
    Period size: 2  Copynumber: 21.0  Consensus size: 2

        135 TTCATTGGTA

                                                                          
        145 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT -T CT CT
          1 CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT CT

        186 TACCTTTTTT


Statistics
Matches: 38,  Mismatches: 0, Indels: 2
        0.95            0.00        0.05

Matches are distributed among these distances:
   1    1  0.03
   2   37  0.97

ACGTcount: A:0.00, C:0.49, G:0.00, T:0.51


Consensus pattern (2 bp):   
CT

Done.