Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02025.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 576

Length: 960
ACGTcount: A:0.37, C:0.16, G:0.25, T:0.22


Found at i:51 original size:15 final size:15

Alignment explanation


    Indices: 31--69  Score: 60
    Period size: 15  Copynumber: 2.6  Consensus size: 15

         21 CGAGAATGGG

                           
         31 AGAAGACAAAAAAGA
          1 AGAAGACAAAAAAGA

                  *     *  
         46 AGAAGAGAAAAAGGA
          1 AGAAGACAAAAAAGA

                     
         61 AGAAGACAA
          1 AGAAGACAA

         70 CCCAGAGATT


Statistics
Matches: 21,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   21  1.00

ACGTcount: A:0.69, C:0.05, G:0.26, T:0.00


Consensus pattern (15 bp):   
AGAAGACAAAAAAGA
Done.