Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02040.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2400
ACGTcount: A:0.26, C:0.16, G:0.24, T:0.34


Found at i:415 original size:6 final size:6

Alignment explanation


    Indices: 404--435  Score: 50
    Period size: 6  Copynumber: 5.7  Consensus size: 6

        394 TTTTGGGTCT

                                                   
        404 TTTTTG TTTTTG TTTTTG TTTTT- TTTTT- TTTT
          1 TTTTTG TTTTTG TTTTTG TTTTTG TTTTTG TTTT

        436 AATTTGATGG


Statistics
Matches: 26,  Mismatches: 0, Indels: 1
        0.96            0.00        0.04

Matches are distributed among these distances:
   5    9  0.35
   6   17  0.65

ACGTcount: A:0.00, C:0.00, G:0.09, T:0.91


Consensus pattern (6 bp):   
TTTTTG

Done.