Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02056.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1759
ACGTcount: A:0.31, C:0.18, G:0.19, T:0.33


Found at i:395 original size:13 final size:14

Alignment explanation


    Indices: 367--395  Score: 51
    Period size: 14  Copynumber: 2.1  Consensus size: 14

        357 TTTTTTTAAC

                          
        367 TTTTCCCAGTAAAA
          1 TTTTCCCAGTAAAA

                          
        381 TTTTCCCAG-AAAA
          1 TTTTCCCAGTAAAA

              
        394 TT
          1 TT

        396 AAAAAAAAAA


Statistics
Matches: 15,  Mismatches: 0, Indels: 1
        0.94            0.00        0.06

Matches are distributed among these distances:
  13    6  0.40
  14    9  0.60

ACGTcount: A:0.34, C:0.21, G:0.07, T:0.38


Consensus pattern (14 bp):   
TTTTCCCAGTAAAA
Done.