Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02067.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 405

Length: 675
ACGTcount: A:0.30, C:0.16, G:0.21, T:0.32


Found at i:197 original size:17 final size:17

Alignment explanation


    Indices: 172--204  Score: 57
    Period size: 17  Copynumber: 1.9  Consensus size: 17

        162 TTTAATCCTT

                             
        172 CTTTATTTCCCTCAAAG
          1 CTTTATTTCCCTCAAAG

                *           
        189 CTTTTTTTCCCTCAAA
          1 CTTTATTTCCCTCAAA

        205 CTCCTTTTGA


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  17   15  1.00

ACGTcount: A:0.21, C:0.30, G:0.03, T:0.45


Consensus pattern (17 bp):   
CTTTATTTCCCTCAAAG
Done.