Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga01g01469.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 810

Length: 1351
ACGTcount: A:0.27, C:0.23, G:0.20, T:0.30


Found at i:605 original size:35 final size:35

Alignment explanation


    Indices: 565--634  Score: 122
    Period size: 35  Copynumber: 2.0  Consensus size: 35

        555 ACTCAGCCCT

                                               
        565 TGCAATCGGTAGTCAGTGGCGCAACTCGCAAGCAG
          1 TGCAATCGGTAGTCAGTGGCGCAACTCGCAAGCAG

                             *     *           
        600 TGCAATCGGTAGTCAGTTGCGCAGCTCGCAAGCAG
          1 TGCAATCGGTAGTCAGTGGCGCAACTCGCAAGCAG

        635 CAAGCTCGTC


Statistics
Matches: 33,  Mismatches: 2, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  35   33  1.00

ACGTcount: A:0.24, C:0.26, G:0.31, T:0.19


Consensus pattern (35 bp):   
TGCAATCGGTAGTCAGTGGCGCAACTCGCAAGCAG
Done.