Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02076.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4817
ACGTcount: A:0.30, C:0.18, G:0.21, T:0.31


Found at i:314 original size:95 final size:94

Alignment explanation


    Indices: 17--553  Score: 429
    Period size: 95  Copynumber: 5.7  Consensus size: 94

          7 ATCATTGATA

                     *            *     *    *           **                  
         17 TTTTCTTTTGGTAATATTTTTTTTCCTGGGACGAGAAAATTAGGGAAAAAATTTCGAAAATCAAC
          1 TTTTCTTTTAGTAATA-TTTTTCT-CTGAGACGGGAAAATTAGGGGGAAAA--TCGAAAATCAAC

             *         *        *           *   
         82 AGATTTCTGGATCTAGAGGTTTTTTTTTCTTCATGT
         62 AAATTTCT-GAGCTAG-GGTATTTTTTT-TTCCTGT

                           *     *   *      *                              * 
        118 TTTTCTTTTAGTAATTTTTTTGTCTAAGACGGAAAAATTAGGGGGAAAAATCGAAAATCAACAGA
          1 TTTTCTTTTAGTAATATTTTTCTCTGAGACGGGAAAATTAGGGGG-AAAATCGAAAATCAACAAA

                            * *       *   
        183 TTTCTG-G--A---T-CTATTTTTT-ATGT
         65 TTTCTGAGCTAGGGTATTTTTTTTTCCTGT

                                     *                                       
        205 TTTTCTTTTAGTAATATTTTTCTCTAAGACGGGAAAATTAGGGGGGAAAATCGAAAATCAACAAA
          1 TTTTCTTTTAGTAATATTTTTCTCTGAGACGGGAAAATTA-GGGGGAAAATCGAAAATCAACAAA

                                           
        270 TTTCTGCAGCTAGGGTATTTTTTTTTCCTGT
         65 TTTCTG-AGCTAGGGTATTTTTTTTTCCTGT

                     *                                          *    * *     
        301 TTTTC-TTTGGTAATATTTTTTCTCTGAGACGGGAAAATTA-GGGGAAAATTTGAAACTTAACAA
          1 TTTTCTTTTAGTAATA-TTTTTCTCTGAGACGGGAAAATTAGGGGGAAAA-TCGAAAATCAACAA

                *      ***      *    *        
        364 ATTTATG-GCTTTCG-A-TTCTTTTCCCTGTTGT
         64 ATTTCTGAGCTAGGGTATTTTTTTTTCC---TGT

                                               *  *           * *    *       
        395 TTTTCTTTTAGTAATATTTTTCTCTGAGACGGGAAGATAAGGGGGAAAATTGGAAATTAACAAAT
          1 TTTTCTTTTAGTAATATTTTTCTCTGAGACGGGAAAATTAGGGGGAAAATCGAAAATCAACAAAT

                   *     *           *     
        460 TTCTGGATCTAGGAT-TTTTTTTTTTCTGTT
         66 TTCT-GAGCTAGGGTATTTTTTTTTCCTG-T

                        *             *     *           **                   
        490 GTTTTCTTTTAGCAATA-TTTTCTCTTAGACGAGAAAATTAGGGAAAAAATCGAAAATCAACAAA
          1 -TTTTCTTTTAGTAATATTTTTCTCTGAGACGGGAAAATTAGGGGGAAAATCGAAAATCAACAAA

        554 ATAATCGATG


Statistics
Matches: 358,  Mismatches: 54, Indels: 54
        0.77            0.12        0.12

Matches are distributed among these distances:
  87   65  0.18
  88    7  0.02
  89    6  0.02
  90    1  0.00
  91    9  0.03
  92    1  0.00
  93    4  0.01
  94   59  0.16
  95   90  0.25
  96   48  0.13
  97    8  0.02
  98   20  0.06
  99   16  0.04
 100   10  0.03
 101   14  0.04

ACGTcount: A:0.30, C:0.11, G:0.18, T:0.41


Consensus pattern (94 bp):   
TTTTCTTTTAGTAATATTTTTCTCTGAGACGGGAAAATTAGGGGGAAAATCGAAAATCAACAAAT
TTCTGAGCTAGGGTATTTTTTTTTCCTGT

Done.