Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02094.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5577
ACGTcount: A:0.31, C:0.18, G:0.25, T:0.26


Found at i:2634 original size:15 final size:15

Alignment explanation


    Indices: 2616--2656  Score: 55
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2606 TGATGAAGTT

                           
       2616 GAAAGAGATGAGGTG
          1 GAAAGAGATGAGGTG

                       *  *
       2631 GAAAGAGATGATGTT
          1 GAAAGAGATGAGGTG

              *        
       2646 GAGAGAGATGA
          1 GAAAGAGATGA

       2657 AGACTCTGAA


Statistics
Matches: 23,  Mismatches: 3, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  15   23  1.00

ACGTcount: A:0.41, C:0.00, G:0.41, T:0.17


Consensus pattern (15 bp):   
GAAAGAGATGAGGTG

Found at i:5264 original size:18 final size:18

Alignment explanation


    Indices: 5222--5256  Score: 52
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       5212 TCGAAGCTAG

                         *    
       5222 TTATGAAGATGACGATGC
          1 TTATGAAGATGACAATGC

                        *    
       5240 TTATGAAGATGATAATG
          1 TTATGAAGATGACAATG

       5257 GCTTTGAACA


Statistics
Matches: 15,  Mismatches: 2, Indels: 0
        0.88            0.12        0.00

Matches are distributed among these distances:
  18   15  1.00

ACGTcount: A:0.37, C:0.06, G:0.26, T:0.31


Consensus pattern (18 bp):   
TTATGAAGATGACAATGC
Done.