Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02095.F4

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5700
ACGTcount: A:0.30, C:0.17, G:0.25, T:0.27


Found at i:2768 original size:15 final size:15

Alignment explanation


    Indices: 2750--2790  Score: 64
    Period size: 15  Copynumber: 2.7  Consensus size: 15

       2740 TGATGAAGTT

                           
       2750 GAAAGAGATGAGGTG
          1 GAAAGAGATGAGGTG

                       *  *
       2765 GAAAGAGATGATGTT
          1 GAAAGAGATGAGGTG

                       
       2780 GAAAGAGATGA
          1 GAAAGAGATGA

       2791 AGACTCTGAA


Statistics
Matches: 24,  Mismatches: 2, Indels: 0
        0.92            0.08        0.00

Matches are distributed among these distances:
  15   24  1.00

ACGTcount: A:0.44, C:0.00, G:0.39, T:0.17


Consensus pattern (15 bp):   
GAAAGAGATGAGGTG
Done.