Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02112.F3

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1822
ACGTcount: A:0.26, C:0.21, G:0.22, T:0.32


Found at i:887 original size:47 final size:47

Alignment explanation


    Indices: 818--940  Score: 185
    Period size: 47  Copynumber: 2.6  Consensus size: 47

        808 TTCTATTGAT

                                                            
        818 CTCATA-ACATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC
          1 CTCATATA-ATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC

                            **     *                    *  
        865 CTCATATAATGTTTTCGTTGTTCGGTTGTAGTCCATGCTTCTGGTAC
          1 CTCATATAATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC

                                   *     
        912 CTCATATAATGTTTTCAATGTTCGGTTGT
          1 CTCATATAATGTTTTCAATGTTCAGTTGT

        941 CCTACAAACG


Statistics
Matches: 69,  Mismatches: 6, Indels: 2
        0.90            0.08        0.03

Matches are distributed among these distances:
  47   68  0.99
  48    1  0.01

ACGTcount: A:0.19, C:0.20, G:0.19, T:0.43


Consensus pattern (47 bp):   
CTCATATAATGTTTTCAATGTTCAGTTGTAGTCCATGCTTCTGGCAC
Done.