Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02124.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4246
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.35


Found at i:3044 original size:97 final size:96

Alignment explanation


    Indices: 2874--3056  Score: 267
    Period size: 97  Copynumber: 1.9  Consensus size: 96

       2864 AATCAAGTTG

                      *         *  *           *                           * 
       2874 GGTCAAGTTTGGGTTTTTGGGTTTGGGAAAAATTGGTAAGTCGATGTCAGATGCATATCTTAATA
          1 GGTCAAGTTTAGGTTTTTGGATTCGGGAAAAATTGATAAGTCGATGTCAGATGCATATCTTAACA

                           *               
       2939 TGGGTACGAGAATATGATAGAAAATTTAATA
         66 TGGGTACGAGAATATAATAGAAAATTTAATA

                *                                      *     *    *          
       2970 GGTCGAGTTTAGGTTTTTGGATTCCGGGAAAAATTGATAAGTCTATGTCGGATGTATATCTTAAC
          1 GGTCAAGTTTAGGTTTTTGGATT-CGGGAAAAATTGATAAGTCGATGTCAGATGCATATCTTAAC

                                  
       3035 ATGGGTACGAGAATATAATAGA
         65 ATGGGTACGAGAATATAATAGA

       3057 GAACTTAAAA


Statistics
Matches: 76,  Mismatches: 10, Indels: 1
        0.87            0.11        0.01

Matches are distributed among these distances:
  96   20  0.26
  97   56  0.74

ACGTcount: A:0.32, C:0.08, G:0.27, T:0.34


Consensus pattern (96 bp):   
GGTCAAGTTTAGGTTTTTGGATTCGGGAAAAATTGATAAGTCGATGTCAGATGCATATCTTAACA
TGGGTACGAGAATATAATAGAAAATTTAATA
Done.