Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02125.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2131
ACGTcount: A:0.27, C:0.18, G:0.24, T:0.30


Found at i:1954 original size:6 final size:6

Alignment explanation


    Indices: 1938--1978  Score: 55
    Period size: 6  Copynumber: 6.8  Consensus size: 6

       1928 CGAAAGGGAA

                   *    *             *                    
       1938 GGACCC AGACCT GGACCC GGACCT GGACCC GGACCC GGACC
          1 GGACCC GGACCC GGACCC GGACCC GGACCC GGACCC GGACC

       1979 TAGATGGGGA


Statistics
Matches: 29,  Mismatches: 6, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
   6   29  1.00

ACGTcount: A:0.20, C:0.44, G:0.32, T:0.05


Consensus pattern (6 bp):   
GGACCC

Found at i:1955 original size:12 final size:12

Alignment explanation


    Indices: 1938--1978  Score: 64
    Period size: 12  Copynumber: 3.4  Consensus size: 12

       1928 CGAAAGGGAA

                  *     
       1938 GGACCCAGACCT
          1 GGACCCGGACCT

                        
       1950 GGACCCGGACCT
          1 GGACCCGGACCT

                       *
       1962 GGACCCGGACCC
          1 GGACCCGGACCT

                 
       1974 GGACC
          1 GGACC

       1979 TAGATGGGGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 0
        0.93            0.07        0.00

Matches are distributed among these distances:
  12   27  1.00

ACGTcount: A:0.20, C:0.44, G:0.32, T:0.05


Consensus pattern (12 bp):   
GGACCCGGACCT

Found at i:1966 original size:18 final size:18

Alignment explanation


    Indices: 1945--1979  Score: 61
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       1935 GAAGGACCCA

                *             
       1945 GACCTGGACCCGGACCTG
          1 GACCCGGACCCGGACCTG

                             
       1963 GACCCGGACCCGGACCT
          1 GACCCGGACCCGGACCT

       1980 AGATGGGGAA


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  18   16  1.00

ACGTcount: A:0.17, C:0.43, G:0.31, T:0.09


Consensus pattern (18 bp):   
GACCCGGACCCGGACCTG
Done.