Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02129.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 446

Length: 744
ACGTcount: A:0.27, C:0.17, G:0.17, T:0.39


Found at i:113 original size:13 final size:13

Alignment explanation


    Indices: 69--112  Score: 54
    Period size: 13  Copynumber: 3.5  Consensus size: 13

         59 AAACCAGTGC

                   *    *
         69 AATTTTCGCTTCT
          1 AATTTTCCCTTCA

            *            
         82 CATTTTCCCTTCA
          1 AATTTTCCCTTCA

                         
         95 AATTTTCCC-TCA
          1 AATTTTCCCTTCA

                  
        107 AATTTT
          1 AATTTT

        113 TGTTTTTCAA


Statistics
Matches: 27,  Mismatches: 4, Indels: 1
        0.84            0.12        0.03

Matches are distributed among these distances:
  12    9  0.33
  13   18  0.67

ACGTcount: A:0.20, C:0.27, G:0.02, T:0.50


Consensus pattern (13 bp):   
AATTTTCCCTTCA
Done.