Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02140.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 459

Length: 766
ACGTcount: A:0.32, C:0.21, G:0.19, T:0.28


Found at i:756 original size:21 final size:19

Alignment explanation


    Indices: 725--766  Score: 50
    Period size: 21  Copynumber: 2.1  Consensus size: 19

        715 CGGCAAAGTG

                                
        725 ATTAAATATTAATAA-AAAA
          1 ATTAAATATTAA-AATAAAA

                                 
        744 ATTAGAATGATTAAAATAAAA
          1 ATTA-AAT-ATTAAAATAAAA

              
        765 AT
          1 AT


Statistics
Matches: 20,  Mismatches: 0, Indels: 4
        0.83            0.00        0.17

Matches are distributed among these distances:
  19    4  0.20
  20    5  0.25
  21   11  0.55

ACGTcount: A:0.64, C:0.00, G:0.05, T:0.31


Consensus pattern (19 bp):   
ATTAAATATTAAAATAAAA
Done.