Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02141.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1978
ACGTcount: A:0.30, C:0.17, G:0.22, T:0.31


Found at i:918 original size:89 final size:89

Alignment explanation


    Indices: 767--946  Score: 342
    Period size: 89  Copynumber: 2.0  Consensus size: 89

        757 GGTTTAGGTG

                                                                             
        767 TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
          1 TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT

                                *   
        832 ATATGAGAGTATGTCCGACGTGGA
         66 ATATGAGAGTATGTCCGACGCGGA

                                *                                            
        856 TAAGGATCCGGATTTAGGTATGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
          1 TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT

                                    
        921 ATATGAGAGTATGTCCGACGCGGA
         66 ATATGAGAGTATGTCCGACGCGGA

              
        945 TA
          1 TA

        947 TTGGATGCAA


Statistics
Matches: 89,  Mismatches: 2, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  89   89  1.00

ACGTcount: A:0.25, C:0.13, G:0.27, T:0.35


Consensus pattern (89 bp):   
TAAGGATCCGGATTTAGGTACGTGTTCGACATGGGCTCTTTAGAGGATTATATTCTCGTATTTAT
ATATGAGAGTATGTCCGACGCGGA
Done.