Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02147.F5

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3422
ACGTcount: A:0.30, C:0.19, G:0.21, T:0.30


Found at i:2662 original size:17 final size:16

Alignment explanation


    Indices: 2631--2682  Score: 52
    Period size: 16  Copynumber: 3.2  Consensus size: 16

       2621 ATTTTGGGTC

                   *  *     
       2631 ATTTCAGGTTCAGGTT
          1 ATTTCAGATTTAGGTT

                            *
       2647 AGTTTCAGATTTAGGTC
          1 A-TTTCAGATTTAGGTT

                             
       2664 ATTTCA-AGTTTAGGTT
          1 ATTTCAGA-TTTAGGTT

               
       2680 ATT
          1 ATT

       2683 AACTTTTTAT


Statistics
Matches: 30,  Mismatches: 4, Indels: 4
        0.79            0.11        0.11

Matches are distributed among these distances:
  15    1  0.03
  16   16  0.53
  17   13  0.43

ACGTcount: A:0.23, C:0.10, G:0.21, T:0.46


Consensus pattern (16 bp):   
ATTTCAGATTTAGGTT

Done.