Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02150.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3890
ACGTcount: A:0.31, C:0.20, G:0.20, T:0.29


Found at i:3013 original size:187 final size:188

Alignment explanation


    Indices: 2565--3278  Score: 954
    Period size: 188  Copynumber: 3.8  Consensus size: 188

       2555 GCTGTGAGAT

                                            *             *  *          *    
       2565 TTCATAAAAGTGTTTGATGATAATCACAAAACGCTAAATCCTCCCTGGCTAAATAACTCTTAACC
          1 TTCATAAAAGTGTTTGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAACC

                  *                                     *      *             
       2630 CATTAGTAAAGCTTTTGGTTCAAGTAAAGGCGG-CCTT-ACACCGCAAACCCAGCTCTCATCAAC
         66 CATTAGCAAAGCTTTTGGTTCAAGTAAAGG-GGTCCTTCA-ACCACAAACCTAGCTCTCATCAAC

                * *  *         *       *                                
       2693 ACCACAGTAACTATAGTTCTGATGAAGCCTTCGAATGAATCAAACACAGAGAATGCGAGG
        129 ACCATAATAGCTATAGTTCCGATGAAGGCTTCGAATGAATCAAACACAGAGAATGCGAGG

                 *    *                                                      
       2753 TTCATGAAAGCGTTTGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAACC
          1 TTCATAAAAGTGTTTGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAACC

            *                   **                   *                       
       2818 TATTAGCAAAGCTTTTGGTTTGAGTAAAGGGGTCCTTCAACTACAAACCTAGCTCTCATCAACAC
         66 CATTAGCAAAGCTTTTGGTTCAAGTAAAGGGGTCCTTCAACCACAAACCTAGCTCTCATCAACAC

                                         *                            
       2883 CATAATAGCTATAGTTCCGATGAAGGCTTAGAATGAATCAAACACAGA-AATGCGAGG
        131 CATAATAGCTATAGTTCCGATGAAGGCTTCGAATGAATCAAACACAGAGAATGCGAGG

                        * *                                                  
       2940 TTCATAAAAGTGATGGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAACC
          1 TTCATAAAAGTGTTTGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAACC

                         *                  *             *          *       
       3005 CATTAGCAAAGCTCTTGGTTCAAGTAAA-GGGCCCTTCAACCACAACCCTAGCTCTCCTCAACAC
         66 CATTAGCAAAGCTTTTGGTTCAAGTAAAGGGGTCCTTCAACCACAAACCTAGCTCTCATCAACAC

                              *                            *           
       3069 CATAATAGCTATAGTTCCAATGAAGGCTTCGAACT-AATCAAACACAAAGAATGCGAGG
        131 CATAATAGCTATAGTTCCGATGAAGGCTTCGAA-TGAATCAAACACAGAGAATGCGAGG

                   *                *                 *       *              
       3127 TTTCATAGAAGTGTTTGATGATAACCACAAAACCCTAAATCCACCCTAGCTAAATAACTCTAAAC
          1 -TTCATAAAAGTGTTTGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAAC

                 *          *      *  *     **      *            *           
       3192 CCATTGGCAAAGCATTCT-GTTCGAGCAAAGGCATCCTTTAAACCACAAACCCAAGCTCTCATCA
         65 CCATTAGCAAAGC-TTTTGGTTCAAGTAAAGGGGTCC-TTCAACCACAAA-CCTAGCTCTCATCA

                              *    
       3256 ACACCATAAATAGCTATAATTCC
        127 ACACCAT-AATAGCTATAGTTCC

       3279 AAAGTCCAAA


Statistics
Matches: 463,  Mismatches: 53, Indels: 16
        0.87            0.10        0.03

Matches are distributed among these distances:
 186   75  0.16
 187  106  0.23
 188  233  0.50
 189    6  0.01
 190   10  0.02
 191   19  0.04
 192   14  0.03

ACGTcount: A:0.37, C:0.25, G:0.14, T:0.24


Consensus pattern (188 bp):   
TTCATAAAAGTGTTTGATGATAATCACAAAACCCTAAATCCTCCCTAGCCAAATAACTCTAAACC
CATTAGCAAAGCTTTTGGTTCAAGTAAAGGGGTCCTTCAACCACAAACCTAGCTCTCATCAACAC
CATAATAGCTATAGTTCCGATGAAGGCTTCGAATGAATCAAACACAGAGAATGCGAGG
Done.