Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02165.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 409

Length: 683
ACGTcount: A:0.25, C:0.19, G:0.21, T:0.35


Found at i:39 original size:14 final size:14

Alignment explanation


    Indices: 20--50  Score: 53
    Period size: 14  Copynumber: 2.2  Consensus size: 14

         10 CCAAACAAAG

                      *   
         20 CCTCCTCCTCTCCT
          1 CCTCCTCCTCCCCT

                          
         34 CCTCCTCCTCCCCT
          1 CCTCCTCCTCCCCT

               
         48 CCT
          1 CCT

         51 TCCTTTGCTG


Statistics
Matches: 16,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  14   16  1.00

ACGTcount: A:0.00, C:0.68, G:0.00, T:0.32


Consensus pattern (14 bp):   
CCTCCTCCTCCCCT
Done.