Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02169.P1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2220
ACGTcount: A:0.28, C:0.17, G:0.18, T:0.37


Found at i:1065 original size:119 final size:118

Alignment explanation


    Indices: 842--1070  Score: 264
    Period size: 119  Copynumber: 1.9  Consensus size: 118

        832 TGTAATTTTT

                                                     *   ** * ***  *  *      
        842 TTAGAATAGCTATACTGTTATTGGCATAACCTATGTGCTCCGACTTGGGTGTGGGTGTTAGATAC
          1 TTAGAATAGCTATACTGTTATTGGCATAACCTATGTGCTCCAACTCAGCTACAGGCGTCAGATAC

            *                                 *                   
        907 GGGTCTGTTCTATATATTATGAAGTGTTCTCGTGCATTTGGAGGGTATTGGGAA
         66 AGGTCTGTTCTATATATTATGAAGTGTTCTCGTGAATTTGG-GGGTATTGGGAA

                          *             *                                    
        961 TTAGAATAGCTATATTGTTATTGGCATAGCCTATGTGCTCCAACTCAGCTACAGGCGTCAGATAC
          1 TTAGAATAGCTATACTGTTATTGGCATAACCTATGTGCTCCAACTCAGCTACAGGCGTCAGATAC

                * *                  *      *              
       1026 AGGTTTTTTCTATATATTAT-AATTTTGTT-TTGTGAATTTGGGGGT
         66 AGGTCTGTTCTATATATTATGAA--GTGTTCTCGTGAATTTGGGGGT

       1071 TATATCCCTT


Statistics
Matches: 91,  Mismatches: 17, Indels: 5
        0.81            0.15        0.04

Matches are distributed among these distances:
 118    6  0.07
 119   81  0.89
 120    4  0.04

ACGTcount: A:0.23, C:0.13, G:0.25, T:0.39


Consensus pattern (118 bp):   
TTAGAATAGCTATACTGTTATTGGCATAACCTATGTGCTCCAACTCAGCTACAGGCGTCAGATAC
AGGTCTGTTCTATATATTATGAAGTGTTCTCGTGAATTTGGGGGTATTGGGAA
Done.