Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02179.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 980

Length: 1634
ACGTcount: A:0.28, C:0.21, G:0.23, T:0.28


Found at i:156 original size:15 final size:15

Alignment explanation


    Indices: 136--172  Score: 58
    Period size: 15  Copynumber: 2.5  Consensus size: 15

        126 TGAAGCAACA

                            
        136 GCAACAAGC-CTTGAT
          1 GCAACAAGCTCTT-AT

                           
        151 GCAACAAGCTCTTAT
          1 GCAACAAGCTCTTAT

                   
        166 GCAACAA
          1 GCAACAA

        173 CAGTCTCTTT


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  15   18  0.86
  16    3  0.14

ACGTcount: A:0.38, C:0.27, G:0.16, T:0.19


Consensus pattern (15 bp):   
GCAACAAGCTCTTAT
Done.