Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02203.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 600

Length: 1000
ACGTcount: A:0.30, C:0.24, G:0.18, T:0.28


Found at i:321 original size:15 final size:15

Alignment explanation


    Indices: 301--331  Score: 53
    Period size: 15  Copynumber: 2.1  Consensus size: 15

        291 CGCCCCACTT

                       *   
        301 TCAGAGTCTCCTCCC
          1 TCAGAGTCTCCACCC

                           
        316 TCAGAGTCTCCACCC
          1 TCAGAGTCTCCACCC

             
        331 T
          1 T

        332 TAAAATCACG


Statistics
Matches: 15,  Mismatches: 1, Indels: 0
        0.94            0.06        0.00

Matches are distributed among these distances:
  15   15  1.00

ACGTcount: A:0.16, C:0.45, G:0.13, T:0.26


Consensus pattern (15 bp):   
TCAGAGTCTCCACCC
Done.