Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02204.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 723

Length: 1206
ACGTcount: A:0.36, C:0.15, G:0.17, T:0.32


Found at i:890 original size:32 final size:33

Alignment explanation


    Indices: 849--912  Score: 112
    Period size: 32  Copynumber: 2.0  Consensus size: 33

        839 ATTTACTTGC

                                             
        849 GGTTTAGATACTGTAGCGATACTG-TGTAGCGT
          1 GGTTTAGATACTGTAGCGATACTGTTGTAGCGT

                                 *          
        881 GGTTTAGATACTGTAGCGATATTGTTGTAGCG
          1 GGTTTAGATACTGTAGCGATACTGTTGTAGCG

        913 ATATTGTAGC


Statistics
Matches: 30,  Mismatches: 1, Indels: 1
        0.94            0.03        0.03

Matches are distributed among these distances:
  32   23  0.77
  33    7  0.23

ACGTcount: A:0.22, C:0.11, G:0.31, T:0.36


Consensus pattern (33 bp):   
GGTTTAGATACTGTAGCGATACTGTTGTAGCGT

Found at i:911 original size:14 final size:14

Alignment explanation


    Indices: 892--919  Score: 56
    Period size: 14  Copynumber: 2.0  Consensus size: 14

        882 GTTTAGATAC

                          
        892 TGTAGCGATATTGT
          1 TGTAGCGATATTGT

                          
        906 TGTAGCGATATTGT
          1 TGTAGCGATATTGT

        920 AGCGTGTGGT


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  14   14  1.00

ACGTcount: A:0.21, C:0.07, G:0.29, T:0.43


Consensus pattern (14 bp):   
TGTAGCGATATTGT

Found at i:929 original size:46 final size:46

Alignment explanation


    Indices: 860--949  Score: 148
    Period size: 46  Copynumber: 2.0  Consensus size: 46

        850 GTTTAGATAC

                                                          
        860 TGTAGCGATACTGTGTAGCGTGGTTTAGATACTGTAGCGATATTGT
          1 TGTAGCGATACTGTGTAGCGTGGTTTAGATACTGTAGCGATATTGT

                                                          
        906 TGTAGCGATA-T-TGTAGCGTGTGGTTTAGATACTGTAGCGATATT
          1 TGTAGCGATACTGTGTAGC--GTGGTTTAGATACTGTAGCGATATT

        950 ATAGCGTGAG


Statistics
Matches: 42,  Mismatches: 0, Indels: 4
        0.91            0.00        0.09

Matches are distributed among these distances:
  44    6  0.14
  45    1  0.02
  46   35  0.83

ACGTcount: A:0.22, C:0.10, G:0.30, T:0.38


Consensus pattern (46 bp):   
TGTAGCGATACTGTGTAGCGTGGTTTAGATACTGTAGCGATATTGT
Done.