Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga06g02234.F4
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 3986
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.33
Found at i:1590 original size:69 final size:69
Alignment explanation
Indices: 1471--1785 Score: 459
Period size: 69 Copynumber: 4.6 Consensus size: 69
1461 AACATTATCT
* * * *
1471 CTCTCTTATAATCAATTTTCTGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCATT
1 CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCTTT
*
1536 GAAC
66 GGAC
* * *
1540 CTATCTTCTAATCAGTTCTCCGGAAATATATCTGCCCTTAAGAGCTTAACATTGCTTGAATCTTT
1 CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCTTT
1605 GGAC
66 GGAC
* * * *
1609 CTCTCTTCTAATCAATTCTCCGAAAATATATCTGCCCTTGAGAGCCTAACATTGCTTGAATCTTT
1 CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCTTT
*
1674 GGTC
66 GGAC
* * *
1678 CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTTAAGAACTTAACGTTGCTTGAATCTTT
1 CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCTTT
1743 GGAC
66 GGAC
* * *
1747 CTCTCTTCTAATGAGTTCTTTGGAAACATATCTGCCCTT
1 CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTT
1786 GAAAATCTAA
Statistics
Matches: 221, Mismatches: 25, Indels: 0
0.90 0.10 0.00
Matches are distributed among these distances:
69 221 1.00
ACGTcount: A:0.26, C:0.24, G:0.13, T:0.37
Consensus pattern (69 bp):
CTCTCTTCTAATCAGTTCTCTGGAAATATATCTGCCCTTAAGAGCCTAACATTGCTTGAATCTTT
GGAC
Done.