Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02236.N2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 489

Length: 816
ACGTcount: A:0.34, C:0.09, G:0.22, T:0.34


Found at i:123 original size:26 final size:26

Alignment explanation


    Indices: 88--223  Score: 227
    Period size: 26  Copynumber: 5.2  Consensus size: 26

         78 TGATACAAAT

                                      
         88 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

             *                        
        114 TAATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

             *                *    *  
        140 TAATAATAGGTTAGGTAAGTGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                   *  
        166 TGATAATAGGTTAGGTAAATGTTCCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                                      
        192 TGATAATAGGTTAGGTAAATGTTTCA
          1 TGATAATAGGTTAGGTAAATGTTTCA

                  
        218 TGATAA
          1 TGATAA

        224 GAATTTCATG


Statistics
Matches: 104,  Mismatches: 6, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  26  104  1.00

ACGTcount: A:0.36, C:0.05, G:0.22, T:0.37


Consensus pattern (26 bp):   
TGATAATAGGTTAGGTAAATGTTTCA

Done.