Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02243.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 648

Length: 1080
ACGTcount: A:0.36, C:0.22, G:0.19, T:0.24


Found at i:186 original size:44 final size:43

Alignment explanation


    Indices: 137--324  Score: 157
    Period size: 44  Copynumber: 4.3  Consensus size: 43

        127 TTTAAGCAAT

                                     *          *       
        137 AGTGGAGCAGACTAAAGATACCAATTTTATCTCCCTAAAGTTGC
          1 AGTGGAGCAGACTAAA-ATACCAATCTTATCTCCCTGAAGTTGC

                         **       *  *                   
        181 AGTGGAGCAGA-TCGAATCCACTAACCTTATCTCCCTGAAGTTGC
          1 AGTGGAGCAGACTAAAAT--ACCAATCTTATCTCCCTGAAGTTGC

                        *    **                         * 
        225 AGTGGAGCA-AGTTGAAGTTA-CAAGTCTTATCTCCCTGAAGTTAC
          1 AGTGGAGCAGA-CT-AAAATACCAA-TCTTATCTCCCTGAAGTTGC

                   *            *              *         
        269 AGTGGAGTAGACTGAAAATAGCAGATCTTATCTCCTTGAAGTTGC
          1 AGTGGAGCAGACT-AAAATACCA-ATCTTATCTCCCTGAAGTTGC

             *         
        314 AATGGAGCAGA
          1 AGTGGAGCAGA

        325 TTAAGCTACG


Statistics
Matches: 114,  Mismatches: 21, Indels: 17
        0.75            0.14        0.11

Matches are distributed among these distances:
  42    2  0.02
  43    5  0.04
  44   74  0.65
  45   31  0.27
  46    2  0.02

ACGTcount: A:0.31, C:0.20, G:0.22, T:0.27


Consensus pattern (43 bp):   
AGTGGAGCAGACTAAAATACCAATCTTATCTCCCTGAAGTTGC
Done.