Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02244.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 571

Length: 952
ACGTcount: A:0.32, C:0.16, G:0.19, T:0.34


Found at i:335 original size:31 final size:31

Alignment explanation


    Indices: 292--357  Score: 123
    Period size: 31  Copynumber: 2.1  Consensus size: 31

        282 CTCTTAAAGT

                                           
        292 AGCAATGAATATCATTCACTATGAAGATGAA
          1 AGCAATGAATATCATTCACTATGAAGATGAA

                   *                       
        323 AGCAATGGATATCATTCACTATGAAGATGAA
          1 AGCAATGAATATCATTCACTATGAAGATGAA

                
        354 AGCA
          1 AGCA

        358 GTCGCTATAT


Statistics
Matches: 34,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   34  1.00

ACGTcount: A:0.44, C:0.14, G:0.18, T:0.24


Consensus pattern (31 bp):   
AGCAATGAATATCATTCACTATGAAGATGAA
Done.