Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02251.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 646

Length: 1078
ACGTcount: A:0.42, C:0.19, G:0.14, T:0.26


Found at i:453 original size:11 final size:11

Alignment explanation


    Indices: 437--461  Score: 50
    Period size: 11  Copynumber: 2.3  Consensus size: 11

        427 AAATTAAAAA

                       
        437 TAAAAATAATT
          1 TAAAAATAATT

                       
        448 TAAAAATAATT
          1 TAAAAATAATT

               
        459 TAA
          1 TAA

        462 TATTAAAATC


Statistics
Matches: 14,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  11   14  1.00

ACGTcount: A:0.64, C:0.00, G:0.00, T:0.36


Consensus pattern (11 bp):   
TAAAAATAATT

Found at i:467 original size:17 final size:18

Alignment explanation


    Indices: 424--469  Score: 51
    Period size: 17  Copynumber: 2.7  Consensus size: 18

        414 TTAAAGTTAC

                *             
        424 TTAAAATTAAAAATAAAA
          1 TTAATATTAAAAATAAAA

            *                *
        442 ATAAT-TTAAAAAT-AAT
          1 TTAATATTAAAAATAAAA

                        
        458 TTAATATTAAAA
          1 TTAATATTAAAA

        470 TCGAGCCGGG


Statistics
Matches: 23,  Mismatches: 4, Indels: 3
        0.77            0.13        0.10

Matches are distributed among these distances:
  16    6  0.26
  17   14  0.61
  18    3  0.13

ACGTcount: A:0.65, C:0.00, G:0.00, T:0.35


Consensus pattern (18 bp):   
TTAATATTAAAAATAAAA
Done.