Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga06g02257.N1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2811
ACGTcount: A:0.28, C:0.17, G:0.24, T:0.31


Found at i:746 original size:27 final size:26

Alignment explanation


    Indices: 706--817  Score: 109
    Period size: 27  Copynumber: 4.2  Consensus size: 26

        696 AGGAAGCGTC

                     *                 
        706 CTGGTGGCTATGCCACGATTATCTGAT
          1 CTGGTGGCTCTGCCAC-ATTATCTGAT

                                       
        733 CTGGTGGCTCTGCCACATATATCTG-T
          1 CTGGTGGCTCTGCCACAT-TATCTGAT

                      *             *    
        759 CCTGGTGGCTTTGCCACGATTATCCGTAT
          1 -CTGGTGGCTCTGCCAC-ATTATCTG-AT

                  *    **           * 
        788 CTGGTGACTCTATCACATTATCTGTT
          1 CTGGTGGCTCTGCCACATTATCTGAT

                
        814 CTGG
          1 CTGG

        818 CAGCCATGCT


Statistics
Matches: 71,  Mismatches: 9, Indels: 11
        0.78            0.10        0.12

Matches are distributed among these distances:
  26    8  0.11
  27   48  0.68
  28   14  0.20
  29    1  0.01

ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36


Consensus pattern (26 bp):   
CTGGTGGCTCTGCCACATTATCTGAT

Found at i:810 original size:54 final size:54

Alignment explanation


    Indices: 703--817  Score: 160
    Period size: 54  Copynumber: 2.1  Consensus size: 54

        693 TGGAGGAAGC

                                      *         *    *            
        703 GTCCTGGTGGCTATGCCACGATTATCTGATCTGGTGGCTCTGCCACATATATCT
          1 GTCCTGGTGGCTATGCCACGATTATCCGATCTGGTGACTCTACCACATATATCT

                        *                              *           
        757 GTCCTGGTGGCTTTGCCACGATTATCCGTATCTGGTGACTCTATCACAT-TATCT
          1 GTCCTGGTGGCTATGCCACGATTATCCG-ATCTGGTGACTCTACCACATATATCT

              *    
        811 GTTCTGG
          1 GTCCTGG

        818 CAGCCATGCT


Statistics
Matches: 54,  Mismatches: 6, Indels: 2
        0.87            0.10        0.03

Matches are distributed among these distances:
  54   37  0.69
  55   17  0.31

ACGTcount: A:0.16, C:0.25, G:0.23, T:0.36


Consensus pattern (54 bp):   
GTCCTGGTGGCTATGCCACGATTATCCGATCTGGTGACTCTACCACATATATCT
Done.