Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00001.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3063
ACGTcount: A:0.26, C:0.18, G:0.16, T:0.40


Found at i:2779 original size:39 final size:39

Alignment explanation


    Indices: 2729--2809  Score: 126
    Period size: 39  Copynumber: 2.1  Consensus size: 39

       2719 ACCGGCCACA

                  *                                
       2729 ACCATCGTCGTTCACCAGTCAGGCAGTCACCACCGGTAC
          1 ACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTAC

                                   *        *    * 
       2768 ACCATCATCGTTCACCAGTCAGGTAGTCACCATCGGTCC
          1 ACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTAC

               
       2807 ACC
          1 ACC

       2810 CGTCACCACC


Statistics
Matches: 38,  Mismatches: 4, Indels: 0
        0.90            0.10        0.00

Matches are distributed among these distances:
  39   38  1.00

ACGTcount: A:0.23, C:0.38, G:0.19, T:0.20


Consensus pattern (39 bp):   
ACCATCATCGTTCACCAGTCAGGCAGTCACCACCGGTAC
Done.