Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00010.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4857
ACGTcount: A:0.28, C:0.17, G:0.19, T:0.36


Found at i:4084 original size:29 final size:29

Alignment explanation


    Indices: 4013--4071  Score: 118
    Period size: 29  Copynumber: 2.0  Consensus size: 29

       4003 CAACTTGCAG

                                         
       4013 CTATACTGACTAGAGGCTAAAAGAAGAGT
          1 CTATACTGACTAGAGGCTAAAAGAAGAGT

                                         
       4042 CTATACTGACTAGAGGCTAAAAGAAGAGT
          1 CTATACTGACTAGAGGCTAAAAGAAGAGT

             
       4071 C
          1 C

       4072 ATTTGGCATT


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  29   30  1.00

ACGTcount: A:0.41, C:0.15, G:0.24, T:0.20


Consensus pattern (29 bp):   
CTATACTGACTAGAGGCTAAAAGAAGAGT
Done.