Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00021.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2023
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22


Found at i:1371 original size:75 final size:75

Alignment explanation


    Indices: 1292--1734  Score: 778
    Period size: 75  Copynumber: 5.9  Consensus size: 75

       1282 AAACAATAGT

                                         *     *                       *     
       1292 AGAGGAAGCAAATGTGGTAATTGCCACAAGCCAAGTACAAGAAGAAGCGCTGCATGGGGTAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1357 AAACCATTGA
         66 AAACCATTGA

                                                                             
       1367 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1432 AAACCATTGA
         66 AAACCATTGA

                       *                            *                *       
       1442 AGAGGAAGCAACTGTGGTAATTGCCACAAACCAAGAACAAAAAGAAGCGCTGCATGGCGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1507 AAACCATTGA
         66 AAACCATTGA

                              *     *       *                                
       1517 AGAGGAAGCAAATGTGGTCATTGCAACAAACCGAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1582 AAACCATTGA
         66 AAACCATTGA

                                                                          *  
       1592 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAACGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1657 AAACCATTGA
         66 AAACCATTGA

                                               *      *                      
       1667 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGTACAAGATGAAGCGCTGCATGGGGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

               
       1732 AAA
         66 AAA

       1735 TCGCAACACC


Statistics
Matches: 349,  Mismatches: 19, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  75  349  1.00

ACGTcount: A:0.43, C:0.16, G:0.28, T:0.13


Consensus pattern (75 bp):   
AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
AAACCATTGA

Done.