Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00021.F2

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2032
ACGTcount: A:0.36, C:0.19, G:0.23, T:0.22


Found at i:1380 original size:75 final size:75

Alignment explanation


    Indices: 1301--1743  Score: 778
    Period size: 75  Copynumber: 5.9  Consensus size: 75

       1291 AAACAATAGT

                                         *     *                       *     
       1301 AGAGGAAGCAAATGTGGTAATTGCCACAAGCCAAGTACAAGAAGAAGCGCTGCATGGGGTAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1366 AAACCATTGA
         66 AAACCATTGA

                                                                             
       1376 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1441 AAACCATTGA
         66 AAACCATTGA

                       *                            *                *       
       1451 AGAGGAAGCAACTGTGGTAATTGCCACAAACCAAGAACAAAAAGAAGCGCTGCATGGCGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1516 AAACCATTGA
         66 AAACCATTGA

                              *     *       *                                
       1526 AGAGGAAGCAAATGTGGTCATTGCAACAAACCGAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1591 AAACCATTGA
         66 AAACCATTGA

                                                                          *  
       1601 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAACGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

                      
       1666 AAACCATTGA
         66 AAACCATTGA

                                               *      *                      
       1676 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGTACAAGATGAAGCGCTGCATGGGGAAAAGG
          1 AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG

               
       1741 AAA
         66 AAA

       1744 TCGCAACACC


Statistics
Matches: 349,  Mismatches: 19, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  75  349  1.00

ACGTcount: A:0.43, C:0.16, G:0.28, T:0.13


Consensus pattern (75 bp):   
AGAGGAAGCAAATGTGGTAATTGCCACAAACCAAGAACAAGAAGAAGCGCTGCATGGGGAAAAGG
AAACCATTGA

Done.