Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: Ga07g00040.F1

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2328
ACGTcount: A:0.26, C:0.22, G:0.23, T:0.29


Found at i:1703 original size:15 final size:15

Alignment explanation


    Indices: 1683--1727  Score: 90
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       1673 ATAAACCTGT

                           
       1683 GTCAGCATGCTTCAC
          1 GTCAGCATGCTTCAC

                           
       1698 GTCAGCATGCTTCAC
          1 GTCAGCATGCTTCAC

                           
       1713 GTCAGCATGCTTCAC
          1 GTCAGCATGCTTCAC

       1728 CCAAAAACCA


Statistics
Matches: 30,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  15   30  1.00

ACGTcount: A:0.20, C:0.33, G:0.20, T:0.27


Consensus pattern (15 bp):   
GTCAGCATGCTTCAC
Done.