Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: Ga07g00046.F1
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 2709
ACGTcount: A:0.26, C:0.09, G:0.27, T:0.37
Found at i:2437 original size:234 final size:233
Alignment explanation
Indices: 2029--2495 Score: 792
Period size: 234 Copynumber: 2.0 Consensus size: 233
2019 TTCAATGACT
* * *
2029 GCTATCGATGCTGTTGTGGCTGAGGATGGTGCGGTTAAGGTGGATCTGAGAGTATTTTTGACTAA
1 GCTATCGATACTGTTGTGACTGAGGATGGTGCGGTTAAGGTAGATCTGAGAGTATTTTTGACTAA
*
2094 GATTAGAATTCTTTTGTTTCTTTATTTGTTGATCTTGGTTATTTGGTGGTGATTTTTTGGTGAGT
66 GATTAGAATTCTTTTGTTTCTTTATTTGTTGATCTTGGTTATTTGGTGGTGATTTCTTGGTGAGT
2159 TATTAAGGCATTGAGCCATTGGTCTATTCAAGCAATTTTTGCAGGCATGGTTTGAGATTTGTTAA
131 TATTAAGGCATTGAGCCATTGGTCTATTCAAGCAATTTTTGCAGGCATGGTTTGAGATTTGTTAA
*
2224 GGGCTGGAAACGTTGTTTTCTTGGTGGCAAATAAGAAA
196 GGGCTGGAAACGTTGTTTACTTGGTGGCAAATAAGAAA
* * *
2262 GCTATCGATACTGTTGTGACTGAGGCTGGTGTGGTTAAGGTAGATCT-ACGAGTATTTTTTACTA
1 GCTATCGATACTGTTGTGACTGAGGATGGTGCGGTTAAGGTAGATCTGA-GAGTATTTTTGACTA
*
2326 AGATTTAGAATTCTTTTGTTTTTTTATTTGTTGATCTTGGTTATTTGGTGGTGATTTCTTGGTGA
65 AGA-TTAGAATTCTTTTGTTTCTTTATTTGTTGATCTTGGTTATTTGGTGGTGATTTCTTGGTGA
2391 GTTATTAAGGCATTGAGCCATTGGTCTATTCAAGCAATTTTTGCAGGCATGGTTTGAGATTTGTT
129 GTTATTAAGGCATTGAGCCATTGGTCTATTCAAGCAATTTTTGCAGGCATGGTTTGAGATTTGTT
* * * *
2456 AGGGGCTGGAAATGTTGTTTACTTGGTGGTAGATAAGAAA
194 AAGGGCTGGAAACGTTGTTTACTTGGTGGCAAATAAGAAA
2496 AGTAACGAAT
Statistics
Matches: 219, Mismatches: 13, Indels: 3
0.93 0.06 0.01
Matches are distributed among these distances:
232 1 0.00
233 59 0.27
234 159 0.73
ACGTcount: A:0.22, C:0.09, G:0.28, T:0.42
Consensus pattern (233 bp):
GCTATCGATACTGTTGTGACTGAGGATGGTGCGGTTAAGGTAGATCTGAGAGTATTTTTGACTAA
GATTAGAATTCTTTTGTTTCTTTATTTGTTGATCTTGGTTATTTGGTGGTGATTTCTTGGTGAGT
TATTAAGGCATTGAGCCATTGGTCTATTCAAGCAATTTTTGCAGGCATGGTTTGAGATTTGTTAA
GGGCTGGAAACGTTGTTTACTTGGTGGCAAATAAGAAA
Done.